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Thursday, April 13, 2023

3.131 - AMICOR (25)

 3.131 - AMICOR (25)

#Dra. Valderês Antonietta Robinson Achutti (*13/06/1931+15/06/2021)


Tahiti 1987, ano em que completou seus 56 anos, como no corrente, a filha mais nova dela
#Slideshow: 101 fotos de abertura Clicar em apresentação de slides

#IHME
Banner with the IHME logo and tagline, "Measuring what matters"

Zoom meeting with three participants: Dr. Sarah Wulf Hanson, Pauline Chiou, and Dr. Celine Gounder

IHME lead research scientist Dr. Sarah Wulf Hanson and Dr. Céline Gounder, clinical associate professor in medicine and infectious diseases at NYU's Grossman School of Medicine, shared their research on long COVID in a Global Health Insights podcast last month.
  • Long COVID has two main categories. The first type stemmed from severe infections early in the pandemic and resulted in residual organ damage, like lung scarring or heart damage.
  • The second type of long COVID is becoming more common – cases that stemmed from initially mild infections. Symptoms include fatigue, shortness of breath, and cognitive symptoms like brain fog and memory loss. There are still big questions about what causes it mechanistically, making it more difficult to treat.
  • In terms of risk of developing long COVID, women are at much higher risk than men, and young people under the age of 20 have lower risk than older adults.

Watch the podcast
Listen to the podcast
Top stories
Gloved hands of a healthcare professional putting pressure on a patient’s arm

Over half of US private health insurance consumers had at least two chronic conditions

The new joint study between the University of Southern Denmark and IHME revealed that chronic kidney disease, liver cirrhosis, ischemic heart disease, and inflammatory bowel disease were the highest contributors to multimorbidity spending among US private health insurance users in 2018. Read the research→

Cartoon of long-haired person holding their arms out and a variety of WHO initiatives represented in squares on their dress

Marking 75 years of the World Health Organization

In recognition of WHO’s 75th anniversary, IHME professor Rafael Lozano penned an opinion piece in El EconomistaRead the article

IHME in the news
glass of red wine
Having an alcoholic drink or two per day is not healthier than abstaining, study shows (NBC News)
» Emmanuela Gakidou, a professor of health metrics sciences at the University of Washington’s Institute for Health Metrics and Evaluation, said her own research has shown that small amounts of alcohol are associated with a lower risk of ischemic heart disease and stroke.
tweet from Juan Revenga linking to the GBD Compare tool
Tweet of the week Twitter logo

Os comparto una herramienta brutal (y visual) con infinidad de posibilidades para conocer y comparar la carga global de enfermedades en todo el mundo y por regiones desde 1990 hasta 2019 (fecha última de la que tienen datos), gracias a @IHME_UW
 
— Juan Revenga (@juan_revenga)
What we're reading
‘Spreading faster than ever’: Bangladesh’s tea pickers have world’s highest rate of leprosy
» Despite the WHO declaring it eliminated in 1998, thousands of tea pickers have caught the disease. (The Guardian)

Teens, trust and the ethics of ChatGPT: A bold wish list for WHO as it turns 75
» NPR asked eight global health specialists to offer a bold new agenda item to add to WHO's docket. (NPR)
New datasets published
# Do Professor e AMICOR Cesar Victora
Cesar Victora International Center for Equity in Health Federal University of Pelotas 
Rua Deodoro 1160 Pelotas, RS, Brazil 96020220 Phone / Fax 55 53 3284 1300
www.equidade.org

COVID-19 UPDATE

 

9 April 2023

 

Many thanks to all those who sent me comments on polio after last week’s email. Pat Sidley write, “I remember the iron lung rather well and there is one in the foyer of Medical School of Wits.” Barry Schoub succinctly summarised our challenge with polio vaccination, “Will universal switching to inactivated vaccine and thereby sacrifice gut immunity still achieve high enough levels of immunity? Or should the push be for the much easier strategy in order to reach high levels of population immunity with oral vaccine?” And Lynn Morris reminded me about the importance of wastewater surveillance for cVDPV and how this helped Covid-19 wastewater surveillance, “The wastewater surveillance for COVID was built on the back of the polio program.”

 

Today’s missive is being written as I fly over the Atlantic, going to attend several meetings, including the Gates Global Health Scientific Advisory Committee, the NEJM Board meeting, the National Academy of Medicine Emerging Leaders Forum, CHAVD SAC, etc. Scientific meeting schedules are even more hectic now than pre-Covid as organisations get their meetings back on track. It’s almost as if Covid-19 is over – there are now so many in-person meetings, many without an online participation option. I, for one, find the in-person meetings much more stimulating and appreciate the personal interaction with friends and colleagues again, even though it is time-consuming, worsening climate change and costly (flights seem to be so much more expensive now).

 

But I cannot help but reflect on how we couldn’t do this just a few months ago without a vaccine requirement, masks and occasionally an on-site negative rapid test requirement.  There are 4 main reasons for this change:

  1. immunity is widespread, either from vaccination, natural infection or both. The latter, which provides hybrid immunity, is probably an important contributor due to its added protection.
  2. While new variants of concern were emerging every 6-9 months initially, leading to new waves, we have not had a new variant of concern in the last 15 months. And the risk of a new variant of concern recedes with each passing day. We know that new variants continue to emerge, but they are sub-variants within the omicron lineage that do not rise to the status of variant of concern, and they do not pose a significant threat since some level of omicron immunity is widespread, even though new omicron variants can escape some antibody immunity.
  3. This combination of immunity and the lack of variants with complete escape, makes us more confident that even if we inadvertently interact with someone with Covid-19, that the infected person will likely be minimally infectious with low viral load and that we would have sufficient protection against this.
  4. As a result, we have progressively come to terms with this virus and have developed tolerance to the risk involved, as this risk has receded, though there are still outbreaks (and superspreading events) from conferences and meetings. But our willingness to run this gauntlet, without giving it a second thought, is also driven by the fact that we are the survivors, whether we have survived natural infection or avoided getting infected at all and so are less concerned about an enemy we have dealt with and overcome previously.

 

While we have adapted to this virus over the last 3+ years, the virus has continued to adapt to our protection against it.  While there are over 600 omicron variants circulating worldwide, the latest variant in the evolution of the virus is XBB.1.16, which is now spreading in many countries (Figure 1). I have not yet seen data on the extent of cross-neutralisation from past immunity stemming from omicron BA.1, BA.5 or XBB.1.5 infection and so the extent to which our vaccine and natural immunity will protect us is not known. However, the mutations and their likely effects do not ring any alarm bells off at present. 

 

XBB.1.16 has spread to several countries, including the US (Figure 2).  While XBB.1.5 still dominates in the US, XBB.1.16 has been reported from several states. Maria van Kerkhove made the important point in her Science editorial this week that the continual evolution of the virus makes the timely sharing of viral sequence data very important.

 

 

The extent to which XBB.1.16 or its sub-lineages will lead to widespread infection depends on their immune escape capabilities and their ability to be more transmissible. In Figure 3 below, which I have included in a past missive, the ability to become a dominant variant is substantially influenced by the transmissibility of the new virus. The variants of concern and the new omicron sub-lineages have continued to evolve to become more infectious, which each new variation of the virus having higher transmissibility. But this cannot continue ad infinitum – it has to come to a point where there are no or only small increases in transmissibility, too small to enable the new variant to become a new dominant variant, at which point the existing circulating strain will remain dominant as the endemic form of the virus, spreading periodically in relation to waning immunity rather than increased transmissibility.

 

As the world moves in this direction, protecting the elderly and vulnerable is going to become the mainstay of our approach to Covid-19. In this regard, the protection offered by a combination of vaccination and early treatment is going to be important to keeping infections, hospitalisations and deaths low. For this approach, testing is going to be key. Testing is key to identifying staff and others who may pose a risk to the elderly, especially in old age homes. In Figure 4 below, a study showed the benefit of testing staff and the elderly in old age homes. Testing is need for both early treatment initiation with drugs like Paxlovid and for initiation of public health measures such as quarantine to reduce the risk of exposing the elderly to infected individuals.

 

I am concluding this week’s email with a fun fact - a fascinating discovery in the world of mathematics, referred to as the “einstein” tile. The name has nothing to do with Albert Einstein, it is derived from the search for “one tile” (Figure 5). For decades, mathematicians have been trying to find a single tile that could be laid down infinitely without creating a repeated pattern. About 50 years ago, a combination of 2 tiles was described that could achieve this. But now, David Smith has found a hat shaped tile that can achieve this as a single tile. I was struck by the shape of the tile and its ability to be laid down without creating any pattern. It struck me how even a seemingly simple problem like this required such a long time to reach a solution – but now it has been solved!

 

Have a great week.

 

Yours

Slim

 

PS: If you do not wish you continue to receive this weekly Covid-19 update email, please email STOP to Marothi.

 

 

The CAPRISA Epidemic Intelligence Unit includes:

Salim S. Abdool Karim  Q Abdool Karim  Nonhlanhla Yende-Zuma  Marothi Letsoalo 

Nikita Devnarain ∙ Smita Maharaj

 

Funded by the German Agency for International Cooperation (GIZ)

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To subscribe to or unsubscribe from mailing list, kindly email Marothi.Letsoalo@caprisa.org.

 

***************************************************************

Professor Salim S. Abdool Karim, FRS

Director: CAPRISA CAPRISA Professor of Global Health: Department of Epidemiology,

          Mailman School of Public Health, Columbia University

Special Advisor to the Director-General of the World Health Organisation

Adjunct Professor in Immunology and Infectious Diseases, Harvard University

Adjunct Professor of Medicine: Cornell University

Pro Vice-Chancellor (Research): University of KwaZulu-Natal

Director: DST-NRF Centre of Excellence in HIV Prevention

Director: Global Virus Network (GVN)-CAPRISA Center of Excellence

Associate: Ragon Institute of MGH, MIT and Harvard University

Vice-President: International Science Council Tel: +27 – 31 – 2604550

***************************************************************

#ASRM
Prêmio Açorianos Especial de Literatura 2023, pela obra Divina Rima, com a ilustradora da obra Zorávia Bettiol.
 
 Prêmio entregue dia 29 de março no Teatro Renascença.
 
Acad. Gilberto Schwartsmann.
 


#
My Bookmarks

MATHEMATICAL PHYSICS | ALL TOPICS

 

How to Tame the Endless Infinities Hiding in the Heart of Particle Physics

By CHARLIE WOOD

In the math of particle physics, every calculation should result in infinity. Physicists get around this by just ignoring certain parts of the equations — an approach that provides approximate answers. But by using the techniques known as “resurgence,” researchers hope to end the infinities and end up with perfectly precise predictions.

Read the article

GEOMETRY

 

Hobbyist Finds Math’s Elusive ‘Einstein’ Tile

By ERICA KLARREICH

The surprisingly simple tile is the first single, connected tile that can fill the entire plane aperiodically.

Read the article


Related: 
‘Nasty’ Geometry Breaks
Decades-Old Tiling Conjecture

By Jordana Cepelewicz (2022)

ALGORITHMS

 

How Randomness Improves Algorithms

By BEN BRUBAKER

Unpredictability can help computer scientists solve otherwise intractable problems.

Read the blog


Related: 
How Randomness
Can Make Math Easier

By Kevin Hartnett (2019)

THE JOY OF WHY

 

What Has the Pandemic Taught Us About Vaccines?

Podcast hosted by STEVEN STROGATZ

Should Covid-19 vaccines be judged by how well they prevent disease or how well they prevent death? Anna Durbin, a public health expert and vaccine researcher, talks about the science behind vaccines.

Listen to the podcast

Read the transcript

EVOLUTION

 

Animal Mutation Rates Reveal Traits That Speed Evolution

By YASEMIN SAPLAKOGLU

The first large-scale comparison of mutation rates gives insights into how quickly species can evolve.

Read the blog


Related: 
Unexpected ‘Germline’ Plant Cells
May Shield New Generations

By Charlie Wood (2019)

Around the Web

Unreliable Narrator
New research shows that our memory can become unreliable in as little as a few seconds after an event, reports Nicola Davis for The Guardian. Unreliable memories are a universal experience that we’ve only recently begun to understand neurologically. Last year, Veronique Greenwood wrote for Quanta about how the uncertainty in our memories appears to be reflected in the electrical chatter in our brain signals.


Offsite Parasite
Toxoplasma gondii is one of the most widespread parasites in the world, but it only reproduces sexually in the intestines of cats. Now researchers have figured out how to grow the toxoplasma cells in a lab, reports Catherine Offord for Science Magazine. Although it’s a far cry from the mind-controlling fungus in “The Last of Us,” some evidence hints that Toxoplasma might subtly change the behavior of infected humans. Tara C. Smith explained the science of zombie-like infections for Quanta in February.

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